{"id":342,"date":"2022-12-21T11:58:58","date_gmt":"2022-12-21T19:58:58","guid":{"rendered":"https:\/\/cahnrs.wsu.edu\/research?page_id=342"},"modified":"2026-02-25T12:04:29","modified_gmt":"2026-02-25T20:04:29","slug":"trans-omics-and-big-data","status":"publish","type":"page","link":"https:\/\/cahnrs.wsu.edu\/research\/cahnrs-research-strengths\/trans-omics-and-big-data\/","title":{"rendered":"Trans-Omics and Big Data"},"content":{"rendered":"\n<p class=\"wsu-font-size--large\">CAHNRS researchers employ comprehensive multi-omic strategies to aid in analysis, visualization, and interpretation of big data relevant to sustainable agriculture and natural resource management.<\/p>\n\n\n<div class=\"wsu-card-wrapper wsu-card-wrapper--per-row-1\" >\r\n    \n<article class=\"wsu-card  wsu-card--style-horizontal-33 wsu-color-background--gray-5 wsu-border-top--color-crimson\">\r\n\t\t<div class=\"wsu-image-frame wsu-image--ratio-16-9\">\r\n\t\t\t\t\t<img src=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2023\/01\/bioinformatics-2.jpg\"\r\n\t\t\t\tsrcset=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2023\/01\/bioinformatics-2.jpg 1000w, https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2023\/01\/bioinformatics-2-396x248.jpg 396w, https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2023\/01\/bioinformatics-2-792x495.jpg 792w, https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2023\/01\/bioinformatics-2-768x480.jpg 768w\"\r\n\t\t\t\tsizes=\"(max-width: 1000px) 100vw, 1000px\"\r\n\t\t\t\talt=\"Bioinformatics graphic\"\r\n\t\t\t\tstyle=\"object-position: 50% 50%\"\r\n\t\t\t\t\/>\r\n\t\t\t<\/div>\r\n\t\t<div class=\"wsu-card__content\">\r\n\t\t\t\t\t\t<h2 class=\"wsu-title \">\r\n\t\t\t\t\t\t\tGenomics &amp; Transcriptomics\t\t\t\t\t<\/h2>\r\n\t\t\t\t\t\t\t\t<span class=\"wsu-card__content-custom\">\r\n\t\t\t\n\n<ul><li><a href=\"https:\/\/chem.wsu.edu\/people\/staff\/wsu-profile\/laura.bartley\/\">Laura Bartley<\/a>, genomics and transcriptomics of grasses for biofuels<\/li><li><a href=\"https:\/\/mps.wsu.edu\/dr-maren-friesen\/\">Maren Friesen<\/a>,&nbsp;ecological and evolutionary genomics of symbioses<\/li><li><a href=\"https:\/\/mps.wsu.edu\/dr-david-r-gang\/\">David Gang<\/a>, multi-omic analysis of agriculturally important plant species<\/li><li><a href=\"https:\/\/environment.wsu.edu\/staff\/wsu-profile\/caren.goldberg\/\">Caren Goldberg<\/a>, population genomics of amphibians<\/li><li><a href=\"https:\/\/mps.wsu.edu\/dr-norman-g-lewis\/\">Norm Lewis<\/a>, integrated omics approach to plant biochemical evolution<\/li><li><a href=\"https:\/\/ansci.wsu.edu\/people\/faculty\/holly-neibergs\/\">Holly Neibergs<\/a>, comparative and functional animal genomics<\/li><li><a href=\"https:\/\/mps.wsu.edu\/dr-john-peters\/\">John Peters<\/a>, transcriptomics of microbial physiology<\/li><li><a href=\"https:\/\/ansci.wsu.edu\/people\/faculty\/michael-phelps\/\">Michael Phelps<\/a>, Director of the&nbsp;<a href=\"https:\/\/mphelpslab.org\/tcspg\">Thorgaard Center for Salmonid Physiology and Genomics<\/a>, functional genomics and phenomics of salmonids and other aquatic organisms<\/li><li><a href=\"https:\/\/mps.wsu.edu\/dr-karen-sanguinet\/\">Karen Sanguinet<\/a>, genomics of root architecture<\/li><\/ul>\n\n\n\n<p><\/p>\n\n\t\t<\/span>\r\n\t\t\t\t\t<\/div>\r\n\t<\/article>\n\n<article class=\"wsu-card  wsu-color-background--gray-5 wsu-border-top--color-crimson wsu-card--style-horizontal-33 wsu-card--layout-reversed\">\r\n\t\t<div class=\"wsu-image-frame wsu-image--ratio-16-9\">\r\n\t\t\t\t\t<img src=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2022\/12\/image-79.jpeg\"\r\n\t\t\t\tsrcset=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2022\/12\/image-79.jpeg 300w, https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2022\/12\/image-79-198x198.jpeg 198w\"\r\n\t\t\t\tsizes=\"(max-width: 300px) 100vw, 300px\"\r\n\t\t\t\talt=\"Random molecule structures scattered.\"\r\n\t\t\t\tstyle=\"object-position: 50% 50%\"\r\n\t\t\t\t\/>\r\n\t\t\t<\/div>\r\n\t\t<div class=\"wsu-card__content\">\r\n\t\t\t\t\t\t<h2 class=\"wsu-title \">\r\n\t\t\t\t\t\t\tMetabolomics &amp; Proteomics\t\t\t\t\t<\/h2>\r\n\t\t\t\t\t\t\t\t<span class=\"wsu-card__content-custom\">\r\n\t\t\t\n\n<ul><li><a href=\"https:\/\/mps.wsu.edu\/dr-david-r-gang\/\">David Gang<\/a>,&nbsp;Director of the&nbsp;<a href=\"https:\/\/labs.wsu.edu\/tipl\/\">Tissue Imaging, Metabolomics, and Proteomics Laboratory<\/a><\/li><li><a href=\"https:\/\/mps.wsu.edu\/dr-mark-lange\/\">Mark Lange<\/a>, Director of the&nbsp;<a href=\"https:\/\/labs.wsu.edu\/murdock-metabolomics\/\">M.J. Murdock Metabolomics Laboratory Service Center<\/a><\/li><\/ul>\n\n\t\t<\/span>\r\n\t\t\t\t\t<\/div>\r\n\t<\/article>\n\n<article class=\"wsu-card  wsu-color-background--gray-5 wsu-border-top--color-crimson wsu-card--style-horizontal-33\">\r\n\t\t<div class=\"wsu-image-frame wsu-image--ratio-16-9\">\r\n\t\t\t\t\t<img src=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2022\/12\/image-9.png\"\r\n\t\t\t\tsrcset=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2022\/12\/image-9.png 300w, https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2022\/12\/image-9-198x198.png 198w\"\r\n\t\t\t\tsizes=\"(max-width: 300px) 100vw, 300px\"\r\n\t\t\t\talt=\"Man driving machine in field.\"\r\n\t\t\t\tstyle=\"object-position: 50% 50%\"\r\n\t\t\t\t\/>\r\n\t\t\t<\/div>\r\n\t\t<div class=\"wsu-card__content\">\r\n\t\t\t\t\t\t<h2 class=\"wsu-title \">\r\n\t\t\t\t\t\t\t<a href=\"http:\/\/phenomics.cahnrs.wsu.edu\/\">Plant Phenomics<\/a>\t\t\t\t\t<\/h2>\r\n\t\t\t\t\t\t\t\t<span class=\"wsu-card__content-custom\">\r\n\t\t\t\n\n<ul><li><a href=\"https:\/\/mps.wsu.edu\/dr-helmut-kirchhoff\/\">Helmut Kirchhoff<\/a>, Phenomics Center Coordinator<\/li><li>Dominik Schneider, Phenomics Center Manager<\/li><li><a href=\"https:\/\/www.ars.usda.gov\/pacific-west-area\/pullman-wa\/whgq\/people\/kimberly-garland-campbell\/\">Kimberly Campbell<\/a>, wheat research greenhouse phenomics<\/li><li><a href=\"https:\/\/labs.wsu.edu\/sankaran-phenomics\/\">Sindhuja Sankaran<\/a>, field-based phenomics using proximal and remote sensing<\/li><li><a href=\"https:\/\/mps.wsu.edu\/dr-zhiwu-zhang\/\">Zhiwu Zhang<\/a>, high-throughput phenomic data analysis and computation<\/li><\/ul>\n\n\t\t<\/span>\r\n\t\t\t\t\t<\/div>\r\n\t<\/article>\n\n<article class=\"wsu-card  wsu-color-background--gray-5 wsu-border-top--color-crimson wsu-card--style-horizontal-33 wsu-card--layout-reversed\">\r\n\t\t<div class=\"wsu-image-frame wsu-image--ratio-16-9\">\r\n\t\t\t\t\t<img src=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2022\/12\/image-80.jpeg\"\r\n\t\t\t\tsrcset=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2022\/12\/image-80.jpeg 300w, https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2022\/12\/image-80-198x198.jpeg 198w\"\r\n\t\t\t\tsizes=\"(max-width: 300px) 100vw, 300px\"\r\n\t\t\t\talt=\"chemical structure above plants.\"\r\n\t\t\t\tstyle=\"object-position: 50% 50%\"\r\n\t\t\t\t\/>\r\n\t\t\t<\/div>\r\n\t\t<div class=\"wsu-card__content\">\r\n\t\t\t\t\t\t<h2 class=\"wsu-title \">\r\n\t\t\t\t\t\t\tBioinformatics\t\t\t\t\t<\/h2>\r\n\t\t\t\t\t\t\t\t<span class=\"wsu-card__content-custom\">\r\n\t\t\t\n\n<ul><li><a href=\"https:\/\/horticulture.wsu.edu\/people\/stephen-p-ficklin\/\">Stephen <\/a><a href=\"http:\/\/fick-web.cahnrs.wsu.edu\/\">Ficklin<\/a>, cyberinfrastructure supporting transfer, storage, visualization, and analysis of \u201comics\u201d data sets<\/li><li><a href=\"https:\/\/cahnrs.wsu.edu\/people-directory\/people\/wsu-profile\/dorrie\/\">Dorrie Main<\/a>, computational tools and database resources for crop genomics, genetics, and breeding research<\/li><li><a href=\"https:\/\/mps.wsu.edu\/dr-zhiwu-zhang\/\">Zhiwu Zhang<\/a>, high-throughput \u201comics\u201d data analysis and computation<\/li><\/ul>\n\n\n\n<p><\/p>\n\n\t\t<\/span>\r\n\t\t\t\t\t<\/div>\r\n\t<\/article>\n\n<article class=\"wsu-card  wsu-color-background--gray-5 wsu-border-top--color-crimson wsu-card--style-horizontal-33\">\r\n\t\t<div class=\"wsu-image-frame wsu-image--ratio-16-9\">\r\n\t\t\t\t\t<img src=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3174\/2022\/12\/image-81.jpeg\"\r\n\t\t\t\tsrcset=\"\"\r\n\t\t\t\tsizes=\"(max-width: 150px) 100vw, 150px\"\r\n\t\t\t\talt=\"Three leafs on a scale hooked to wires.\"\r\n\t\t\t\tstyle=\"object-position: 50% 50%\"\r\n\t\t\t\t\/>\r\n\t\t\t<\/div>\r\n\t\t<div class=\"wsu-card__content\">\r\n\t\t\t\t\t\t<h2 class=\"wsu-title \">\r\n\t\t\t\t\t\t\t<br>Ecoinformatics\t\t\t\t\t<\/h2>\r\n\t\t\t\t\t\t\t\t<span class=\"wsu-card__content-custom\">\r\n\t\t\t\n\n<ul><li><a rel=\"noreferrer noopener\" href=\"https:\/\/wrc.wsu.edu\/person\/hampton-stephanie\/\" target=\"_blank\">Stephanie Hampton<\/a>, ecological dynamics in aquatic ecosystems<\/li><li><a href=\"https:\/\/scholar.google.com\/citations?user=UcsNuY0AAAAJ&amp;hl=en\">Javier Gutierrez Illan<\/a>, effects of environmental change on biodiversity and pest management from a landscape perspective<\/li><li><a href=\"https:\/\/wrc.wsu.edu\/person\/katz-stephen\/\">Stephen Katz<\/a>, ecological communities and ecosystem stability<\/li><li><a href=\"https:\/\/environment.wsu.edu\/staff\/wsu-profile\/arjan.meddens\/\">Arjan Meddens<\/a>, forest dynamics analysis using satellite and other geospatial data<\/li><\/ul>\n\n\t\t<\/span>\r\n\t\t\t\t\t<\/div>\r\n\t<\/article>\n<\/div>\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>CAHNRS researchers employ comprehensive multi-omic strategies to aid in analysis, visualization, and interpretation of big data relevant to sustainable agriculture and natural resource management.<\/p>\n","protected":false},"author":34206,"featured_media":0,"parent":292,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"categories":[],"tags":[],"wsuwp_university_category":[],"wsuwp_university_location":[],"wsuwp_university_org":[],"_links":{"self":[{"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/pages\/342"}],"collection":[{"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/users\/34206"}],"replies":[{"embeddable":true,"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/comments?post=342"}],"version-history":[{"count":17,"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/pages\/342\/revisions"}],"predecessor-version":[{"id":2325,"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/pages\/342\/revisions\/2325"}],"up":[{"embeddable":true,"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/pages\/292"}],"wp:attachment":[{"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/media?parent=342"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/categories?post=342"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/tags?post=342"},{"taxonomy":"wsuwp_university_category","embeddable":true,"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/wsuwp_university_category?post=342"},{"taxonomy":"wsuwp_university_location","embeddable":true,"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/wsuwp_university_location?post=342"},{"taxonomy":"wsuwp_university_org","embeddable":true,"href":"https:\/\/cahnrs.wsu.edu\/research\/wp-json\/wp\/v2\/wsuwp_university_org?post=342"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}